Package: ggpedigree 1.2.0.90

S. Mason Garrison

ggpedigree: Visualizing Pedigrees with 'ggplot2' and 'plotly'

Provides plotting functions for visualizing pedigrees and family trees. The package complements a behavior genetics package 'BGmisc' [Garrison et al. (2024) <doi:10.21105/joss.06203>] by rendering pedigrees using the 'ggplot2' framework. Features include support for duplicated individuals, complex mating structures, integration with simulated pedigrees, and layout customization. Due to the impending deprecation of kinship2, version 1.0 incorporates the layout helper functions from kinship2. The pedigree alignment algorithms are adapted from 'kinship2' [Sinnwell et al. (2014) <doi:10.1159/000363105>]. We gratefully acknowledge the original authors: Jason Sinnwell, Terry Therneau, Daniel Schaid, and Elizabeth Atkinson for their foundational work.

Authors:S. Mason Garrison [aut, cre, cph]

ggpedigree_1.2.0.90.tar.gz
ggpedigree_1.2.0.90.zip(r-4.7)ggpedigree_1.2.0.90.zip(r-4.6)ggpedigree_1.2.0.90.zip(r-4.5)
ggpedigree_1.2.0.90.tgz(r-4.6-any)ggpedigree_1.2.0.90.tgz(r-4.5-any)
ggpedigree_1.2.0.90.tar.gz(r-4.7-any)ggpedigree_1.2.0.90.tar.gz(r-4.6-any)
ggpedigree_1.2.0.90.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ggpedigree/json (API)

# Install 'ggpedigree' in R:
install.packages('ggpedigree', repos = c('https://r-computing-lab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/r-computing-lab/ggpedigree/issues

Pkgdown/docs site:https://r-computing-lab.github.io

Datasets:

On CRAN:

Conda:

7.83 score 5 stars 75 scripts 677 downloads 14 exports 68 dependencies

Last updated from:1882327e7e. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK279
source / vignettesOK291
linux-release-x86_64OK253
macos-release-arm64OK254
macos-oldrel-arm64OK261
windows-develOK252
windows-releaseOK218
windows-oldrelOK227
wasm-releaseOK163

Exports:calculateConnectionscalculateCoordinatescountOffspringcountSiblingsgenerateSpouseListggpedigreeggPedigreeggPedigreeInteractiveggPhenotypeByDegreeggRelatednessMatrixkinship2_plotPedigreepedigreeplotPedigreerenumberPedigreeIDs

Dependencies:askpassbase64encBGmiscbslibcachemclicpp11crosstalkcurldata.tabledigestdplyrevaluatefarverfastmapfontawesomefsgenericsggplot2gluegtablehighrhtmltoolshtmlwidgetshttrigraphisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMatrixmemoisemimeopensslotelpillarpkgconfigplotlypromisespurrrR6rappdirsRColorBrewerRcpprlangrmarkdownS7sassscalesstringistringrsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunyaml

Plotting pedigrees with ggPedigree()
Introduction | Basic usage | Customizing Aesthetics | Labeling Individuals | Overlaying Status Information | Highlighting Specific Individuals | Highlighting Harry Potter | Multiple families in one graphic | Adjusting Plot Appearance | Advanced Examples: Large Pedigrees with self-loops
Rendered fromv00_plots.Rmdusingknitr::rmarkdown

Last update: 2026-06-12
Started: 2025-06-06

Interactive Pedigree Plotting with ggPedigreeInteractive
Introduction | Example data | Basic Usage
Rendered fromv20_interactiveplots.Rmdusingknitr::rmarkdown

Last update: 2026-03-15
Started: 2026-01-04

Visualizing Relatedness Matrices with ggRelatednessMatrix()
Introduction | Data Preparation | Calculating Relatedness Matrices | Visualizing Relatedness Matrices | Plot Interactively | Customization Options | Comparison to Base R and Other Approaches | Conclusions
Rendered fromv30_matrix.Rmdusingknitr::rmarkdown

Last update: 2026-03-15
Started: 2026-01-04

Using config to control ggpedigree plots
Basic usage of config in ggPedigree() | Sex coding: code_male and code_female | Advanced Examples
Rendered fromv02_configuration.Rmdusingknitr::rmarkdown

Last update: 2026-02-03
Started: 2026-02-03